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C3 origins
Topic Started: Mar 3 2010, 11:15:43 AM (296 Views)
ren
Advanced Member
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JCA's compilation of C3(xC3c) at Dienekes
Hard to tell if C3 was present at the beginning of the Neolithic in North China.
Quote:
 
Here is a preliminary version of my compilation of published data regarding the distribution of haplogroup C3(xC3c) in Asia. The data points in italics do not represent confirmed C3(xC3c), but rather confirmed C or C3 that I have predicted to belong to C3(xC3c) in their entirety or at least in overwhelming majority.

C3-M217(xC3c-M48/M77/M86)
45/81 = 55.6% Buryat (Hammer et al. 2006)
17/45 = 37.8% Inner Mongolian (Xue et al. 2006)
51/149 = 34.2% Mongolia (Hammer et al. 2006)
22/65 = 33.8% Outer Mongolian (Xue et al. 2006)
4/12 = 33.3% Koryaks (Karafet et al. 2002; Pakendorf et al. 2007)
11/39 = 28.2% Daur (Xue et al. 2006)
7/26 = 26.9% Ewenki/PRC Evenks (Xue et al. 2006)
14/52 = 26.9% Manchu/Liaoning (Hammer et al. 2006)
1/4 = 25% Ainu (Hammer et al. 2006)
8/35 = 22.9% Manchu (Xue et al. 2006)
5/22 = 22.7% Oroqen (Hammer et al. 2006)
9/41 = 22.0% Xibe (Xue et al. 2006)
6/28 = 21.4% C-M130 Koreans (Karafet et al. 1999)
6/30 = 20.0% Han/Lanzhou (Xue et al. 2006)
6/31 = 19.4% Oroqen (Xue et al. 2006)
9/49 = 18.4% Tujia/Hunan (Hammer et al. 2006)
6/34 = 17.6% Hani (Xue et al. 2006)
17/98 = 17.3% Altai (Hammer et al. 2006)
1/6 = 17% C3-M217 Vietnam (Kayser et al. 2008)
13/78 = 16.7% Nyukzha Evenks (Pakendorf et al. 2007)
14/85 = 16.5% C(xC3c) Korean/Seoul (Katoh et al. 2004)
7/43 = 16.3% Korean/Korea (Xue et al. 2006)
7/45 = 15.6% C(xC3c) Korean (Wells et al. 2001)
5/35 = 14.3% Han/Harbin (Xue et al. 2006)
3/21 = 14.3% C3-M217 Korea (Kayser et al. 2008)
3/21 = 14.3% C3-M217 Han/Taiwan (Tajima et al. 2004)
1/7 = 14.3% Southern Altaians/Kosh-Agach (Kharkov et al. 2007)
13/95 = 13.7% Siberian Evenks (Hammer et al. 2006)
4/31 = 12.9% Eastern Evens (Karafet et al. 2002; Hammer et al. 2006; Pakendorf et al. 2007)
2/16 = 12.5% C3-M217 Ainu (Tajima et al. 2004)
3/25 = 12.0% Korean/PRC (Xue et al. 2006)
4/34 = 11.8% Han/Chengdu (Xue et al. 2006)
2/17 = 11.8% C3-M217 Malaysia (Kayser et al. 2008)
4/35 = 11.4% Hui (Xue et al. 2006)
6/54 = 11.1% C3-M217 Hui/Ningxia (Karafet et al. 2001)
5/45 = 11.1% Hezhe/PRC Nanai (Xue et al. 2006)
2/20 = 10.0% C-RPS4Y Yakuts (Karafet et al. 1999)
4/41 = 9.8% Manchurian/PRC Evenks (Hammer et al. 2006)
3/35 = 8.6% Han/Meixian (Xue et al. 2006)
4/49 = 8.2% C3-M217 Northern Han (Tajima et al. 2004)
1/13 = 7.7% Yukaghirs (Pakendorf et al. 2007)
6/84 = 7.1% Han/Taiwan (Hammer et al. 2006)
2/32 = 6.3% Han/Yili (Xue et al. 2006)
3/55 = 5.5% Tuvans (Pakendorf et al. 2007)
4/78 = 5.1% Cun/Hainan (Li et al. 2008)
2/40 = 5.0% Han/Guangdong (Hammer et al. 2006)
2/44 = 4.5% Han/Shaanxi (Hammer et al. 2006)
3/67 = 4.5% Uygurs/Xinjiang (Hammer et al. 2006)
3/70 = 4.3% Vietnamese (Hammer et al. 2006)
1/24 = 4.2% Central Evens (Pakendorf et al. 2007)
3/74 = 4.1% Ha/Hainan (Li et al. 2008)
2/53 = 3.8% Kyushu, Japan (Hammer et al. 2006)
2/58 = 3.4% Miao (Hammer et al. 2006)
1/32 = 3.1% NE Yakut (Pakendorf et al. 2006)
1/33 = 3.0% North Iran (Regueiro et al. 2006)
1/34 = 2.9% She (Xue et al. 2006)
1/35 = 2.9% Yao/Liannan, Guangdong (Xue et al. 2006)
2/77 = 2.6% Kathmandu, Nepal (Gayden et al. 2007)
4/156 = 2.6% Tibet (Gayden et al. 2007)
4/165 = 2.4% Japanese (Nonaka et al. 2007)
1/43 = 2.3% Yizu/Sichuan (Hammer et al. 2006)
1/46 = 2.2% Southern Altaians/Kulada (Kharkov et al. 2007)
1/47 = 2.1% Japanese (Xue et al. 2006)
1/47 = 2.1% Central Yakuts/"okayushie" dialect (Pakendorf et al. 2006)
2/96 = 2.1% Southern Altaians total (Kharkov et al. 2007)
1/48 = 2.1% Philippines (Hammer et al. 2006)
1/48 = 2.1% Taiwan Aborigines (Hammer et al. 2006)
1/49 = 2.0% Central Yakuts/"akayushie" dialect (Pakendorf et al. 2006)
1/50 = 2.0% Jiamao/Hainan (Li et al. 2008)
8/405 = 2.0% Hainan aborigines total (Li et al. 2008)
2/105 = 1.9% Tibet (Hammer et al. 2006)
1/61 = 1.6% Shizuoka, Japan (Hammer et al. 2006)
3/184 = 1.6% Yakuts total (Pakendorf et al. 2006)
4/255 = 1.6% Japan(xAinu) total (Hammer et al. 2006)
1/70 = 1.4% Tokushima, Japan (Hammer et al. 2006)

http://dienekes.blogspot.com/2010/02/global-genetic-history-of-homo-sapiens.html
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Ebizur
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I often find it interesting to review the earliest literature on a topic within the field of genetics in order to see how the consensus of the scientific community has taken shape.

T. M. Karafet, S. L. Zegura, O. Posukh et al., "Ancestral Asian Source(s) of New World Y-Chromosome Founder Haplotypes," American Journal of Human Genetics 64:817-831, 1999 [I believe this study is the first one to have appeared in print with data regarding the prevalence of C-M130 (RPS4Y711), but the authors have cited Bergen et al. (1999) for the definition of the RPS4Y711 mutation: "We genotyped the M9 CG transversion (Underhill et al. 1997) and the CT transition at position 711 within the RPS4Y gene (Bergen et al., in press), using SSO hybridization."]

Haplotype 1F (=C-RPS4Y711)
21/23 = 91.3% Oroqens (Northern Tungusic)
65/95 = 68.4% Siberian Evenks (Northern Tungusic)
26/41 = 63.4% Evens (Northern Tungusic)
49/81 = 60.5% Buryats (Mongolic)
78/148 = 52.7% Mongolians (Mongolic)
16/31 = 51.6% Australian Aboriginal People
6/12 = 50.0% Yukagirs
18/41 = 43.9% Manchurian Evenks (Northern Tungusic)
5/12 = 41.7% Tanana (Northern Athabaskan)
19/53 = 35.8% Indonesians (Malayo-Polynesian & several Papuan language families and isolates)
4/12 = 33.3% Koryaks (Chukotkan)
14/55 = 25.5% Melanesians (Malayo-Polynesian & several Papuan language families and isolates)
1/4 = 25% Chukchi (Chukotkan)
7/29 = 24.1% Altais (Turkic)
5/22 = 22.7% Kazakhs (Turkic)
6/28 = 21.4% Koreans
2/12 = 16.7% Kets (Yeniseian)
7/44 = 15.9% Cheyenne (Algonquian)
5/47 = 10.6% Papua New Guineans (several Papuan language families and isolates & Malayo-Polynesian)
2/20 = 10.0% Yakuts (Turkic)
2/26 = 7.7% South Chinese
2/26 = 7.7% Wayus (Maipurean)
3/44 = 6.8% Taiwanese
6/118 = 5.1% Japanese
2/60 = 3.3% Indians
1/30 = 3.3% Tibetans
1/56 = 1.8% Navajos (Southern Athabaskan)
2/122 = 1.6% Selkups (Southern Samoyedic)
0/4 Alaskan Eskimos (Eskimo-Aleut)
0/8 Komi (Permic)
0/22 Siberian Eskimos (Eskimo-Aleut)
0/27 Forest Nentsi (Northern Samoyedic)
0/30 Russians
0/32 British
0/32 Germans
0/36 Egyptians
0/38 African Pygmies
0/38 Southeast Asians
0/39 Italians
0/42 Greeks
0/43 East Africans
0/48 Gambians
0/52 Tundra Nentsi (Northern Samoyedic)
0/53 West Bantus
0/55 East Bantus
0/62 (Greenland?) Inuit (Eskimo-Aleut)
0/75 Khoisan

A. W. Bergen, C.-Y. Wang, J. Tsai et al., "An Asian-Native American paternal lineage identified by RPS4Y resequencing and by microsatellite haplotyping," Annals of Human Genetics (1999), 63, 63-80 [This seems to have been the first study to describe M130 (RPS4Y711), but it has appeared in print after the aforementioned article by Karafet et al. (1999). Bergen et al. have stated, "One RPS4Y sequence variant, 711C>T, was polymorphic in Asian and Native American populations, but not in African and Caucasian population samples. ... The RPS4Y locus transposed to the Y chromosome early in primate evolution, is found between SRY and ZFY in Homo sapiens, and codes for a functional ribosomal protein (Fisher et al. 1990; Zinn et al. 1994; Bergen et al. 1998)."]

C-RPS4Y711
21/90 = 23.3% Plains Native American
3/16 = 18.8% Korean
3/49 = 6.1% Taiwanese
0/20 Jamaican
0/21 Yakut Native Siberian
0/37 Southwest Desert Native American
0/43 Pueblo Native American
0/65 U.S. population sample
0/248 Finnish

DE-DYS287
10/20 = 50.0% Jamaican
4/58 = 6.9% U.S. population sample
1/27 = 3.7% Pueblo Native American
3/94 = 3.2% Plains Native American
2/346 = 0.6% Finnish
0/37 Yakut Native Siberian
0/42 Korean
0/43 Southwest Desert Native American
0/66 Taiwanese
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